Recent publications
Article
Ba, X, Guo, Y, Moran, RA, Doughty, EL, Liu, B, Yao, L, Li, J, He, N, Shen, S, Li, Y, van Schaik, W, Mcnally, A, Holmes, MA & Zhuo, C 2024, 'Global emergence of a hypervirulent carbapenem-resistant Escherichia coli ST410 clone', Nature Communications, vol. 15, no. 1, 494. https://doi.org/10.1038/s41467-023-43854-3
Pöntinen, AK, Gladstone, RA, Pesonen, H, Pesonen, M, Cléon, F, Parcell, BJ, Kallonen, T, Simonsen, GS, Croucher, NJ, McNally, A, Parkhill, J, Johnsen, PJ, Samuelsen, Ø & Corander, J 2024, 'Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study', The Lancet. Microbe. https://doi.org/10.1016/S2666-5247(23)00292-6
Hall, RJ, Snaith, AE, Thomas, MJN, Brockhurst, MA & McNally, A 2024, 'Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli', mSystems, vol. 9, no. 3, e0119323. https://doi.org/10.1128/msystems.01193-23
Hall, RJ, Snaith, AE, Element, SJ, Moran, RA, Smith, H, Cummins, EA, Bottery, MJ, Chowdhury, KF, Sareen, D, Ahmad, I, Blair, JMA, Carter, LJ & McNally, A 2024, 'Non-antibiotic pharmaceuticals are toxic against Escherichia coli with no evolution of cross-resistance to antibiotics', npj Antimicrobials and Resistance, vol. 2, no. 1, 11 . https://doi.org/10.1038/s44259-024-00028-5
Quarton, S, McGee, K, Cumley, N, Behruznia, M, Jeff, C, Belchamber, K, Cox, M, Thickett, D, Scott, A, Parekh, D, McNally, A & Sapey, E 2024, 'Towards personalised anti-microbial and immune approaches to infections in acute care. Can real-time genomic-informed diagnosis of pathogens, and immune-focused therapies improve outcomes for patients? An observational, experimental study protocol', PLoS ONE, vol. 19, no. 3, e0298425. https://doi.org/10.1371/journal.pone.0298425
Pugh, HL, Connor, C, Siasat, P, McNally, A & Blair, JMA 2023, 'E. coli ST11 (O157:H7) does not encode a functional AcrF efflux pump', Microbiology, vol. 169, no. 4, 001324. https://doi.org/10.1099/mic.0.001324
Doughty, EL, Liu, H, Moran, RA, Hua, X, Ba, X, Guo, F, Chen, X, Zhang, L, Holmes, M, van Schaik, W, McNally, A & Yu, Y 2023, 'Endemicity and diversification of carbapenem-resistant Acinetobacter baumannii in an intensive care unit', The Lancet regional health. Western Pacific, vol. 37, 100780. https://doi.org/10.1016/j.lanwpc.2023.100780
Arredondo-Alonso, S, Blundell-Hunter, G, Fu, Z, Gladstone, RA, Fillol-Salom, A, Loraine, J, Cloutman-Green, E, Johnsen, PJ, Samuelsen, Ø, Pöntinen, AK, Cléon, F, Chavez-Bueno, S, De la Cruz, MA, Ares, MA, Vongsouvath, M, Chmielarczyk, A, Horner, C, Klein, N, McNally, A, Reis, JN, Penadés, JR, Thomson, NR, Corander, J, Taylor, PW & McCarthy, AJ 2023, 'Evolutionary and functional history of the Escherichia coli K1 capsule', Nature Communications, vol. 14, no. 1, 3294 . https://doi.org/10.1038/s41467-023-39052-w
Carrilero, L, Dunn, SJ, Moran, RA, McNally, A & Brockhurst, MA 2023, 'Evolutionary responses to acquiring a multidrug resistance plasmid are dominated by metabolic functions across diverse Escherichia coli lineages', mSystems. https://doi.org/10.1128/msystems.00713-22
Moran, RA, Baomo, L, Doughty, EL, Guo, Y, Ba, X, van Schaik, W, Zhuo, C & McNally, A 2023, 'Extended-Spectrum β-Lactamase Genes Traverse the Escherichia coli Populations of Intensive Care Unit Patients, Staff, and Environment', Microbiology spectrum, vol. 11, no. 2, e0507422. https://doi.org/10.1128/spectrum.05074-22
Ma, K, Feng, Y, McNally, A & Zong, Z 2023, 'Hijacking a small plasmid to confer high-level resistance to aztreonam-avibactam and ceftazidime-avibactam', International Journal of Antimicrobial Agents. https://doi.org/10.1016/j.ijantimicag.2023.106985
Connor, CH, Zucoloto, AZ, Munnoch, JT, Yu, I, Corander, J, Hoskisson, PA, Mcdonald, B & Mcnally, A 2023, 'Multidrug-resistant E. coli encoding high genetic diversity in carbohydrate metabolism genes displace commensal E. coli from the intestinal tract', PLoS Biology, vol. 21, no. 10, e3002329. https://doi.org/10.1371/journal.pbio.3002329
Cummins, EA, Moran, RA, Snaith, AE, Hall, RJ, Connor, CH, Dunn, SJ & McNally, A 2023, 'Parallel loss of type VI secretion systems in two multi-drug-resistant Escherichia coli lineages', Microbial Genomics, vol. 9, no. 11, 001133. https://doi.org/10.1099/mgen.0.001133
Review article
Fang, Q, Ying, X, He, Y, Feng, Y, Zhang, L, Luo, H, Yin, G, McNally, A & Zong, Z 2024, 'Safety and efficacy of phage application in bacterial decolonisation: a systematic review', The Lancet. Microbe. https://doi.org/10.1016/S2666-5247(24)00002-8
Yang, Y, Yan, Y-H, Schofield, CJ, McNally, A, Zong, Z & Li, G-B 2023, 'Metallo-β-lactamase-mediated antimicrobial resistance and progress in inhibitor discovery', Trends in Microbiology. https://doi.org/10.1016/j.tim.2023.01.013
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