Recent publications
Article
Mikaeloff, F, Gelpi, M, Escos, A, Knudsen, AD, Høgh, J, Benfield, T, de Magalhães, JP, Nielsen, SD & Neogi, U 2023, 'Transcriptomics age acceleration in prolonged treated HIV infection', Aging Cell. https://doi.org/10.1111/acel.13951
Vega Magdaleno, GD, Bespalov, V, Zheng, Y, Freitas, AA & Lourenco Rocha De Magalhaes, JP 2022, 'Machine learning-based predictions of dietary restriction associations across ageing-related genes', BMC Bioinformatics, vol. 23, no. 1, 10. https://doi.org/10.1186/s12859-021-04523-8
Tejada-martinez, D, Avelar, RA, Lopes, I, Zhang, B, Novoa, G, De Magalhães, JP, Trizzino, M & Malik, H (ed.) 2022, 'Positive selection and enhancer evolution shaped lifespan and body mass in great apes', Molecular Biology and Evolution, vol. 39, no. 2, msab369. https://doi.org/10.1093/molbev/msab369
Mikaeloff, F, Svensson Akusjärvi, S, Ikomey, GM, Krishnan, S, Sperk, M, Gupta, S, Magdaleno, GDV, Escós, A, Lyonga, E, Okomo, MC, Tagne, CT, Babu, H, Lorson, CL, Végvári, Á, Banerjea, AC, Kele, J, Hanna, LE, Singh, K, De Magalhães, JP, Benfeitas, R & Neogi, U 2022, 'Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection', Communications Biology, vol. 5, no. 1, 27. https://doi.org/10.1038/s42003-021-02985-3
Liu, L, Song, B, Chen, K, Zhang, Y, De Magalhães, JP, Rigden, DJ, Lei, X & Wei, Z 2022, 'WHISTLE server: a high-accuracy genomic coordinate-based machine learning platform for RNA modification prediction', Methods, vol. 203, pp. 378-382. https://doi.org/10.1016/j.ymeth.2021.07.003
Chatsirisupachai, K, Lesluyes, T, Paraoan, L, Van Loo, P & De Magalhães, JP 2021, 'An integrative analysis of the age-associated multi-omic landscape across cancers', Nature Communications, vol. 12, no. 1, 2345 . https://doi.org/10.1038/s41467-021-22560-y
Song, Z, Huang, D, Song, B, Chen, K, Song, Y, Liu, G, Su, J, Magalhães, JPD, Rigden, DJ & Meng, J 2021, 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications', Nature Communications, vol. 12, no. 1, 4011 . https://doi.org/10.1038/s41467-021-24313-3
Song, B, Chen, K, Tang, Y, Wei, Z, Su, J, De Magalhães, JP, Rigden, DJ & Meng, J 2021, 'ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome', Briefings in Bioinformatics, vol. 22, no. 6, bbab088. https://doi.org/10.1093/bib/bbab088
Edogbanya, J, Tejada‐martinez, D, Jones, NJ, Jaiswal, A, Bell, S, Cordeiro, R, Van Dam, S, Rigden, DJ & De Magalhães, JP 2021, 'Evolution, structure and emerging roles of C1ORF112 in DNA replication, DNA damage responses, and cancer', Cellular and Molecular Life Sciences, vol. 78, no. 9, pp. 4365-4376. https://doi.org/10.1007/s00018-021-03789-8
Lourenco Rocha De Magalhaes, JP 2021, 'Longevity pharmacology comes of age', Drug Discovery Today, vol. 26, no. 7, pp. 1559-1562. https://doi.org/10.1016/j.drudis.2021.02.015
Tejada-martinez, D, De Magalhães, JP & Opazo, JC 2021, 'Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer', Proceedings of the Royal Society B: Biological Sciences, vol. 288, no. 1945, 20202592. https://doi.org/10.1098/rspb.2020.2592
Review article
de Magalhães, JP 2023, 'Ageing as a software design flaw', Genome Biology, vol. 24, no. 1, 51. https://doi.org/10.1186/s13059-023-02888-y
Bronikowski, AM, Meisel, RP, Biga, PR, Walters, J, Mank, JE, Larschan, E, Wilkinson, GS, Valenzuela, N, Conard, AM, Magalhães, JP, Duan, J, Elias, AE, Gamble, T, Graze, R, Gribble, KE, Kreiling, JA & Riddle, NC 2022, 'Sex‐specific aging in animals: perspective and future directions', Aging Cell, vol. 21, no. 2, e13542. https://doi.org/10.1111/acel.13542
Short survey
De Magalhães, JP & Ocampo, A 2022, 'Cellular reprogramming and the rise of rejuvenation biotech', Trends in Biotechnology, vol. 40, no. 6, pp. 639-642. https://doi.org/10.1016/j.tibtech.2022.01.011
De Magalhães, JP 2022, 'Every gene can (and possibly will) be associated with cancer', Trends in Genetics, vol. 38, no. 3, pp. 216-217. https://doi.org/10.1016/j.tig.2021.09.005
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