Recent publications
Article
Fang, Q, Feng, Y, McNally, A & Zong, Z 2022, 'Characterization of phage resistance and phages capable of intestinal decolonization of carbapenem-resistant Klebsiella pneumoniae in mice', Communications Biology, vol. 5, no. 1, 48. https://doi.org/10.1038/s42003-022-03001-y
Davies, M, Galazzo, G, van Hattem, JM, Arcilla, MS, Melles, DC, de Jong, MD, Schultsz, C, Wolffs, P, McNally, A, Schaik, WV & Penders, J 2022, 'Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli', Gut Microbes, vol. 14, no. 1, e2060676. https://doi.org/10.1080/19490976.2022.2060676
Hu, Y, Moran, RA, Blackwell, GA, McNally, A & Zong, Z 2022, 'Fine-scale reconstruction of the evolution of FII-33 multidrug resistance plasmids enables high-resolution genomic surveillance', mSystems, vol. 7, no. 1, e0083121. https://doi.org/10.1128/msystems.00831-21
Moran, RA, Liu, H, Doughty, EL, Hua, X, Cummins, EA, Liveikis, T, McNally, A, Zhou, Z, van Schaik, W & Yu, Y 2022, 'GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes', Microbial Genomics, vol. 8, no. 6, 000840. https://doi.org/10.1099/mgen.0.000840
COVID-19 Genomics UK (COG-UK) Consortium 2022, 'SARS-CoV-2 testing in the community: testing positive samples with the TaqMan SARS-CoV-2 mutation panel to find variants in real time', Journal of Clinical Microbiology, vol. 60, no. 4, e0240821. https://doi.org/10.1128/jcm.02408-21
Price, V, Dunn, SJ, Moran, RA, Swindells, J & McNally, A 2022, 'Whole-genome sequencing enhances existing pathogen and antimicrobial-resistance surveillance schemes within a neonatal unit', Microbial Genomics, vol. 8, no. 6, 000841. https://doi.org/10.1099/mgen.0.000841
The COVID-19 Genomics UK (COG-UK) Consortium & McNally, A 2021, 'Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England', Nature, vol. 593, no. 7858, pp. 266–269. https://doi.org/10.1038/s41586-021-03470-x
Zong, Z, Feng, Y & McNally, A 2021, 'Carbapenem and colistin resistance in Enterobacter: determinants and clones', Trends in Microbiology, vol. 29, no. 6, pp. 473-476. https://doi.org/10.1016/j.tim.2020.12.009
COVID-19 Genomics UK (COG-UK) Consortium 2021, 'Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study', The Lancet. Public health, vol. 6, no. 5, pp. e335-e345. https://doi.org/10.1016/s2468-2667(21)00055-4
Kantele, A, Kuenzli, E, Dunn, SJ, Dance, DAB, Newton, PN, Davong, V, Mero, S, Pakkanen, SH, Neumayr, A, Hatz, C, Snaith, A, Kallonen, T, Corander, J & McNally, A 2021, 'Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study', The Lancet. Microbe, vol. 2, no. 4, pp. e151-e158. https://doi.org/10.1016/S2666-5247(20)30224-X
Gladstone, RA, McNally, A, Pöntinen, AK, Tonkin-Hill, G, Lees, JA, Skytén, K, Cléon, F, Christensen, MOK, Haldorsen, BC, Bye, KK, Gammelsrud, KW, Hjetland, R, Kümmel, A, Larsen, HE, Lindemann, PC, Löhr, IH, Marvik, Å, Nilsen, E, Noer, MT, Simonsen, GS, Steinbakk, M, Tofteland, S, Vattøy, M, Bentley, SD, Croucher, NJ, Parkhill, J, Johnsen, PJ, Samuelsen, Ø & Corander, J 2021, 'Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study', The Lancet Microbe, vol. 2, no. 7, pp. e331-e341. https://doi.org/10.1016/S2666-5247(21)00031-8
COVID-19 Genomics UK (COG-UK) Consortium, Elliott, P, Haw, D, Wang, H, Eales, O, Walters, CE, Ainslie, KEC, Atchison, C, Fronterre, C, Diggle, PJ, Page, AJ, Trotter, AJ, Prosolek, SJ, Ashby, D, Donnelly, CA, Barclay, W, Taylor, G, Cooke, G, Ward, H, Darzi, A, Riley, S, McNally, A & Beggs, A 2021, 'Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant', Science. https://doi.org/10.1126/science.abl9551
Comment/debate
McNally, A 2022, 'Covid-19 testing in the UK was not a "shambles" in 2020', BMJ, vol. 377, pp. o916. https://doi.org/10.1136/bmj.o916
Review article
Yang, J, Long, H, Hu, Y, Feng, Y, McNally, A & Zong, Z 2022, 'Klebsiella oxytoca complex: update on taxonomy, antimicrobial resistance, and virulence', Clinical Microbiology Reviews , vol. 35, no. 1, e0000621. https://doi.org/10.1128/CMR.00006-21
Cummins, EA, Hall, RJ, McInerney, JO & McNally, A 2022, 'Prokaryote pangenomes are dynamic entities', Current Opinion in Microbiology, vol. 66, pp. 73-78. https://doi.org/10.1016/j.mib.2022.01.005
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