References

Some useful references showcasing areas of local research expertise.

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High molecular weight complexes

Teresa Carlomagno and colleagues

  • Graziadei, F. Gabel, J. Kirkpatrick, T. Carlomagno (2020). The guide sRNA sequence determines the activity level of Box C/D RNPs. eLife 9:e50027 doi: 10.7554/eLife.50027
  • N. Danilenko, L. Lercher, F. Gabel, J. Kirkpatrick, T. Carlomagno (2019). Histone chaperone exploits intrinsic disorder to switch acetylation specificity. Nature Communications 10, Article number: 3435
  • E. Karaca, J.P.G.L.M. Rodrigues, A. Graziadei, A.M.J.J. Bonvin, T. Carlomagno (2017). An Integrative framework for structure determination of molecular machines. Nature Methods 14, 897–902
  • T.C.R. Miller, B. Simon, V. Rybin, H. Grötsch, T. Carlomagno*, C. W. Müller (2016). A bromodomain-DNA interaction facilitates acetylation-dependent bivalent nucleosome recognition by the BET protein Brdt. Nature Communications  doi: 10.1038/NCOMMS13855
  • Lapinaite, B. Simon, L. Skjaerven, M. Rakwalska-Bange, F.Gabel, T. Carlomagno (2013). The structure of the Box C/D enzyme reveals regulation of rRNA methylation. Nature 502, 519-523

Intrinsic disorder in proteins

Teresa Carlomagno and colleagues

  • N. Danilenko, L. Lercher, F. Gabel, J. Kirkpatrick, T. Carlomagno (2019). Histone chaperone exploits intrinsic disorder to switch acetylation specificity. Nature Communications 10, Article number: 3435

RNA structure and dynamics

Teresa Carlomagno and colleagues

  • P.I. Aguion, J. Kirkpatrick, T. Carlomagno, A. Marchanka (2021). Identification of RNA base pairs and complete assignment of nucleobase resonances by proton-detected solid-state NMR spectroscopy at 100 kHz MAS. Angewandte Chemie 60, 23903-23910
  • M. Ahmed, A. Marchanka, T. Carlomagno (2020). Structure of a protein-RNA complex by ssNMR. Angewandte Chemie 59, 6866-6873 doi: 10.1002/anie.201915465
  • Marchanka, J. Stanek, G. Pintacuda, T. Carlomagno (2018). Rapid access to RNA resonances by proton-detected solid-state NMR at >100 kHz MAS. Chemical Communications 54, 8972 – 8975
  • Marchanka, B. Simon, G. Althoff-Ospelt, T. Carlomagno (2015). RNA structure determination by solid-state NMR spectroscopy. Nature Communications, doi: 10.1038/ncomms8024
  • S. Asami, M. Rakwalska-Bange, T. Carlomagno, B. Reif (2013). Protein/RNA interfaces probed by 1 H detected MAS solid-state NMR spectroscopy. Angewandte Chemie 52, 2345-2349
  • Marchanka, B. Simon, T. Carlomagno (2013). A suite of solid-state NMR experiments for RNA intranucleotide resonance assignment in a 21 kDa protein-RNA complex. Angewandte Chemie 52, 9996-10001

Structure-based drug design

Teresa Carlomagno and colleagues

  • L. Skjærven, L. Codutti, A. Angelini, M. Grimaldi, D. Latek, P. Monecke, M. Dreyer, T. Carlomagno (2013). Protein-ligand induced-fit docking with NMR guided rescoring. Journal of the American Chemical Society 135, 5819-5827
  • J. Orts, S. Bartoschek, C. Griesinger, P. Monecke, T. Carlomagno (2012). An NMR-based scoring function improves the accuracy of binding pose predictions by docking by two orders of magnitude. Journal of Biomolecular NMR 52, 23-30
  • J. Orts, C. Griesinger, T. Carlomagno (2009). The INPHARMA technique for pharmacophore mapping: A theoretical guide to the method. Journal of Magnetic Resonance 200, 64-73
  • J. Orts, J. Tuma, M. Reese, S.K. Grimm, P. Monecke, S. Bartoscheck, A. Schiffer, K.U. Wendt, C. Griesinger, T. Carlomagno (2008). Crystallography independent determination of ligand binding modes. Angewandte Chemie 47, 7736-7740
  • V.M. Sanchez-Pedregal, M. Reese, J. Meiler, M.J.J. Blommers, C. Griesinger, T. Carlomagno (2005). The INPHARMA method: Protein mediated Interligand NOEs for Pharmacophore Mapping. Angewandte Chemie 44, 4172-4175