Legend: * Sharing first or second authorship; # Corresponding authorship
Major Publications
Irvine HJ, Acharjee A, Wolcott Z, Ament Z, Hinson HE, Molyneaux BJ, Simard JM, Sheth KN, Kimberly WT. Hypoxanthine is a pharmacodynamic marker of ischemic brain edema modified by glibenclamide. Cell Rep Med. 2022 Jun 9:100654. doi: 10.1016/j.xcrm.2022.100654. PMID: 35700741.
Wood H*, Acharjee A*, Pearce H, Quraishi MN, Powell R, Rossiter A, Beggs A, Ewer A, Moss P, Toldi G. Breastfeeding promotes early neonatal regulatory T-cell expansion and immune tolerance of non-inherited maternal antigens. Allergy. 2021. doi: 10.1111/all.14736.
Sanders FWB, Acharjee A*, Walker C*, Marney L, Roberts LD, Imamura F, Jenkins B, Case J, Ray S, Virtue S, Vidal-Puig A, Kuh D, Hardy R, Allison M, Forouhi N, Murray AJ, Wareham N, Vacca M, Koulman A, Griffin JL. Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption. Genome Biol. 2018 ;19(1):79. doi: 10.1186/s13059-018-1439-8.
Quraishi MN*, Acharjee A*, Beggs AD, Horniblow R, Tselepis C, Gkoutos G, Ghosh S, Rossiter AE, Loman N, van Schaik W, Withers D, Walters JRF, Hirschfield GM, Iqbal TH. A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways. J Crohns Colitis. 2020 ;14(7):935-947. doi: 10.1093/ecco-jcc/jjaa021. PMID: 32016358; PMCID: PMC7392170.
Xu Y, Nash K, Acharjee A, Gkoutos GV. CACONET: a novel classification framework for microbial correlation networks. Bioinformatics. 2022 Jan 4:btab879. doi: 10.1093/bioinformatics/btab879. PMID: 34983063.
Acharjee A#, Kloosterman B, de Vos RC, Werij JS, Bachem CW, Visser RG, Maliepaard C. Data integration and network reconstruction with -omics data using Random Forest regression in potato. Anal Chim Acta. 2011, 31;705(1-2):56-63
Bravo-Merodio L*, Acharjee A*,#, Hazeldine J, Bentley C, Foster M, Gkoutos GV#, Lord JM. Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction. Sci Data. 2019 ;6(1):328. doi: 10.1038/s41597-019-0337-6.
Acharjee A, Prentice P, Acerini C, Smith J, Ong K, Griffin JL, Dunger D, Koulman A, The translation of lipid profiles to nutritional biomarkers in the study of infant metabolism. Metabolomics. 2017, 13(3):25.
Acharjee A, Ament Z, West JA, Stanley E, Griffin JL, Integration of metabolomics, lipidomics and clinical data using a machine learning method. 2016, BMC Bioinformatics. 2016, 17(Suppl 15):440
Acharjee A, Kloosterman B, Visser RG, Maliepaard C. Integration of multi-omics data for prediction of phenotypic traits using random forest. BMC Bioinformatics. 2016, 6;17 (Suppl 5):180
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