Recent publications
Article
Chakraborty, S, Dhumal, P, Mikulska, I, Pham, S, Bradford, L-J, Menon, D, Misra, SK & Lynch, I 2025, 'Biotic Transformation of Abiotically Stable Nanoscale UiO-66 Metal–Organic Framework by Daphnia magna Results in Chronic Reproductive Toxicity', ACS Nano. https://doi.org/10.1021/acsnano.5c16532
Serra, A, Zouraris, D, Schaffert, A, Torres Maia, M, Tsiros, P, Virmani, I, Di Lieto, E, Saarimäki, LA, Morikka, J, Riudavets-Puig, R, Varsou, D-D, Papavasileiou, KD, Kolokathis, PD, Mintis, DG, Tzoupis, H, Tsoumanis, A, Melagraki, G, Arvanitidis, A, Doganis, P, Minadakis, V, Savvas, G, Perello-Y-Bestard, A, Cucurachi, S, Buljan, M, Nikiforou, F, Karakoltzidis, A, Karakitsios, S, Sarigiannis, DA, Friedrichs, S, Seitz, C, Gutierrez, TN, Isigonis, P, Cambier, S, Marvuglia, A, Lindner, GG, Sergent, J-A, Gheorghe, LC, Bradford, L-JA, Park, S-G, Ha, SM, Gerelkhuu, Z, Yoon, TH, Petry, R, Martinez, DST, Winkler, DA, Wick, P, Exner, TE, Dondero, F, Serchi, T, Peijnenburg, W, Sarimveis, H, Paparella, M, Lynch, I, Afantitis, A & Greco, D 2025, 'INSIGHT: An integrated framework for safe and sustainable chemical and material assessment', Computational and Structural Biotechnology Journal, vol. 29, pp. 125-137. https://doi.org/10.1016/j.csbj.2025.03.042
Zhang, P, Cao, M, Chetwynd, AJ, Faserl, K, Abdolahpur Monikh, F, Zhang, W, Ramautar, R, Ellis, LJA, Davoudi, HH, Reilly, K, Cai, R, Wheeler, KE, Martinez, DST, Guo, Z, Chen, C & Lynch, I 2024, 'Analysis of nanomaterial biocoronas in biological and environmental surroundings', Nature protocols, vol. 19, pp. 3000–3047. https://doi.org/10.1038/s41596-024-01009-8
Maia, MT, Delite, FS, Silva, GHD, Bradford, L, Papadiamantis, AG, Paula, AJ, Lynch, I & Martinez, DST 2024, 'Combined toxicity of fluorescent silica nanoparticles with cadmium in Ceriodaphnia dubia: Interactive effects of natural organic matter and green algae feeding', Journal of Hazardous Materials, vol. 461, 132623. https://doi.org/10.1016/j.jhazmat.2023.132623
Varsou, D-D, Bradford, L, Afantitis, A, Melagraki, G & Lynch, I 2021, 'Ecotoxicological read-across models for predicting acute toxicity of freshly dispersed versus medium-aged NMs to Daphnia magna', Chemosphere, vol. 285, 131452. https://doi.org/10.1016/j.chemosphere.2021.131452
Bradford, L, Kissane, S, Hoffman, E, Valsami-Jones, E, Brown, JB, Colbourne, JK & Lynch, I 2021, 'Multigenerational exposure to nano‐TiO2 induces ageing as a stress response mitigated by environmental interactions', Advanced NanoBiomed Research, vol. 1, no. 6, 2000083. https://doi.org/10.1002/anbr.202000083
Karatzas, P, Melagraki, G, Bradford, L, Lynch, I, Varsou, D-D, Afantitis, A, Tsoumanis, A, Doganis, P & Sarimveis, H 2020, 'Development of Deep Learning Models for Predicting the Effects of Exposure to Engineered Nanomaterials on Daphnia magna', Small, vol. 16, no. 36, e2001080. https://doi.org/10.1002/smll.202001080
Ellis, L-JA, Valsami-Jones, E & Lynch, I 2020, 'Exposure medium and particle ageing moderate the toxicological effects of nanomaterials to Daphnia magna over multiple generations: a case for standard test review?', Environmental Science: Nano, vol. 7, no. 4, pp. 1136-1149. https://doi.org/10.1039/D0EN00049C
Billing, AM, Knudsen, KB, Chetwynd, AJ, Ellis, L-JA, Tang, SVY, Berthing, T, Wallin, H, Lynch, I, Vogel, U & Kjeldsen, F 2020, 'Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles', ACS Nano, vol. 14, no. 4, pp. 4096-4110. https://doi.org/10.1021/acsnano.9b08818
Bradford, L, Kissane, S & Lynch, I 2020, 'Maternal Responses and Adaptive Changes to Environmental Stress via Chronic Nanomaterial Exposure: Differences in Inter and Transgenerational Interclonal Broods of Daphnia magna', International Journal of Molecular Sciences, vol. 22, no. 1, 15. https://doi.org/10.3390/ijms22010015
Chapter
Papadiamantis, AG, Afantitis, A, Tsoumanis, A, Karatzas, P, Doganis, P, Varsou, DD, Sarimveis, H, Bradford, L, Valsami-Jones, E, Lynch, I & Melagraki, G 2022, Image Analysis and Deep Learning Web Services for Nano informatics. in K Roy (ed.), Chemometrics and Cheminformatics in Aquatic Toxicology. Wiley, pp. 547-564. https://doi.org/10.1002/9781119681397.ch28
Comment/debate
Quevedo, AC, Bradford, L, Lynch, I & Valsami-Jones, E 2022, 'Correction: Quevedo et al. Mechanisms of silver nanoparticle uptake by embryonic zebrafish cells. Nanomaterials, 2021, 11, 2699', Nanomaterials, vol. 12, no. 2, 225. https://doi.org/10.3390/nano12020225
Preprint
Chakraborty, S, Dhumal, P, Mikulska, I, Pham, S, Ellis (Bradford), L-J, Menon, D, Misra, SK & Lynch, I 2025 'Biotic Transformation of abiotically stable nanoscale UiO-66 Metal–Organic Frameworks by the waterflea Daphnia magna results in Chronic Reproductive Toxicity' ChemRxiv. https://doi.org/10.26434/chemrxiv-2025-hrf4k
Review article
Reilly, K, Bradford, L, Davoudi, HH, Supian, S, Maia, MT, Silva, GH, Guo, Z, Martinez, DST & Lynch, I 2023, 'Daphnia as a model organism to probe biological responses to nanomaterials—from individual to population effects via adverse outcome pathways', Frontiers in toxicology, vol. 5, 1178482. https://doi.org/10.3389/ftox.2023.1178482
Martinez, DST, Bradford, L, Da Silva, GH, Petry, R, Medeiros, AMZ, Davoudi, HH, Papadiamantis, AG, Fazzio, A, Afantitis, A, Melagraki, G & Lynch, I 2022, 'Daphnia magna and mixture toxicity with nanomaterials – Current status and perspectives in data-driven risk prediction', Nano Today, vol. 43, 101430. https://doi.org/10.1016/j.nantod.2022.101430
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