Recent publications
Article
Cuthbertson, L, Löber, U, Ish-Horowicz, JS, McBrien, CN, Churchward, C, Parker, JC, Olanipekun, MT, Burke, C, McGowan, A, Davies, GA, Lewis, KE, Hopkin, JM, Chung, KF, O’Carroll, O, Faul, J, Creaser-Thomas, J, Andrews, M, Ghosal, R, Piatek, S, Willis-Owen, SAG, Bartolomaeus, TUP, Birkner, T, Dwyer, S, Kumar, N, Turek, EM, William Musk, A, Hui, J, Hunter, M, James, A, Dumas, M-E, Filippi, S, Cox, MJ, Lawley, TD, Forslund, SK, Moffatt, MF & Cookson, WOC 2024, 'Genomic attributes of airway commensal bacteria and mucosa', Communications Biology, vol. 7, no. 1, 171. https://doi.org/10.1038/s42003-024-05840-3
Quarton, S, McGee, K, Cumley, N, Behruznia, M, Jeff, C, Belchamber, K, Cox, M, Thickett, D, Scott, A, Parekh, D, McNally, A & Sapey, E 2024, 'Towards personalised anti-microbial and immune approaches to infections in acute care. Can real-time genomic-informed diagnosis of pathogens, and immune-focused therapies improve outcomes for patients? An observational, experimental study protocol', PLoS ONE, vol. 19, no. 3, e0298425. https://doi.org/10.1371/journal.pone.0298425
Cardenas, PA, Cox, M, Willis-Owen, SAG, Moffatt, MF, Cookson, WOC & Cooper, P 2023, 'Delayed acquisition of airway commensals in antibiotic naive children and its relationship with wheezing in rural Ecuador', Frontiers in Allergy, vol. 4, 1214951. https://doi.org/10.3389/falgy.2023.1214951
Njovu, IK, Nalumaga, PP, Ampaire, L, Nuwagira, E, Mwesigye, J, Musinguzi, B, Kassaza, K, Taseera, K, Kiguli Mukasa, J, Bazira, J, Iramiot, JS, Baguma, A, Bongomin, F, Kwizera, R, Achan, B, Cox, MJ, King, JS, May, R, Ballou, ER & Itabangi, H 2023, 'Investigating Metabolic and Molecular Ecological Evolution of Opportunistic Pulmonary Fungal Coinfections: Protocol for a Laboratory-Based Cross-Sectional Study', JMIR Research Protocols, vol. 12, e48014. https://doi.org/10.2196/48014
Watson, R, Oldfield, M, Bryant, JA, Riordan, L, Hill, HJ, Watts, JA, Alexander, MR, Cox, MJ, Stamataki, Z, Scurr, DJ & de Cogan, F 2022, 'Efficacy of antimicrobial and anti-viral coated air filters to prevent the spread of airborne pathogens', Scientific Reports, vol. 12, no. 1, 2803. https://doi.org/10.1038/s41598-022-06579-9
Chotirmall, SH, Bogaert, D, Chalmers, JD, Cox, MJ, Hansbro, PM, Huang, YJ, Molyneaux, PL, O'Dwyer, DN, Pragman, AA, Rogers, GB, Segal, LN & Dickson, RP 2022, 'Therapeutic targeting of the respiratory microbiome', American Journal of Respiratory and Critical Care Medicine, vol. 206, no. 5, pp. 535-544. https://doi.org/10.1164/rccm.202112-2704PP
Turek, EM, Cox, MJ, Hunter, M, Hui, J, James, P, Willis-Owen, SAG, Cuthbertson, L, James, A, Musk, AW, Moffatt, MF & Cookson, WOCM 2021, 'Airway microbial communities, smoking and asthma in a general population sample', EBioMedicine, vol. 71, 103538. https://doi.org/10.1016/j.ebiom.2021.103538
Ahmed, B, Cox, MJ, Cuthbertson, L, James, P, Gardner, L, Cookson, W, Davies, J, Moffatt, M & Bush, A 2021, 'Comparison of the airway microbiota in children with chronic suppurative lung disease', BMJ Open Respiratory Research, vol. 8, no. 1, e001106. https://doi.org/10.1136/bmjresp-2021-001106
Cox, MJ, Loman, N, Bogaert, D & O'Grady, J 2020, 'Co-infections: potentially lethal and unexplored in COVID-19', The Lancet. Microbe, vol. 1, no. 1, pp. e11. https://doi.org/10.1016/S2666-5247(20)30009-4
Gregorova, M, Morse, D, Brignoli, T, Steventon, J, Hamilton, F, Albur, M, Arnold, D, Thomas, M, Halliday, A, Baum, H, Rice, C, Avison, MB, Davidson, AD, Santopaolo, M, Oliver, E, Goenka, A, Finn, A, Wooldridge, L, Amulic, B, Boyton, RJ, Altmann, DM, Butler, DK, McMurray, C, Stockton, J, Nicholls, S, Cooper, C, Loman, N, Cox, MJ, Rivino, L & Massey, RC 2020, 'Post-acute COVID-19 associated with evidence of bystander t-cell activation and a recurring antibiotic-resistant bacterial pneumonia', eLife, vol. 9, e63430, pp. 1-13. https://doi.org/10.7554/eLife.63430
Groves, HT, Higham, SL, Moffatt, MF, Cox, M & Tregoning, JS 2020, 'Respiratory viral infection alters the gut microbiota by inducing inappetence', mBio, vol. 11, no. 1, e03236-19. https://doi.org/10.1128/mBio.03236-19
Cuthbertson, L, Felton, I, James, P, Cox, MJ, Bilton, D, Schelenz, S, Loebinger, MR, Cookson, WOC, Simmonds, NJ & Moffatt, MF 2020, 'The fungal airway microbiome in cystic fibrosis and non-cystic fibrosis bronchiectasis', Journal of Cystic Fibrosis. https://doi.org/10.1016/j.jcf.2020.05.013
Other contribution
Cuthbertson, L, Cox, M, provided, PNPJN, Churchward, CP, Cookson, B & Moffatt, M 2020, CTAB extraction of DNA and RNA of respiratory samples for microbial work v1.. https://doi.org/10.17504/protocols.io.bf28jqhw
Preprint
Cox, M 2020 'Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia.'. https://doi.org/10.1101/2020.09.17.20190033
Review article
Carney, SM, Clemente, JC, Cox, MJ, Dickson, RP, Huang, YJ, Kitsios, GD, Kloepfer, KM, Leung, JM, LeVan, TD, Molyneaux, PL, Moore, BB, O'Dwyer, DN, Segal, LN & Garantziotis, S 2020, 'Methods in lung microbiome research', American Journal of Respiratory Cell and Molecular Biology, vol. 62, no. 3, pp. 283-299. https://doi.org/10.1165/rcmb.2019-0273TR
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