Recent publications
Article
Campos-León, K, Ferguson, J, Günther, T, Wood, CD, Wingett, SW, Pekel, S, Varghese, CS, Jones, LS, Stockton, JD, Várnai, C, West, MJ, Beggs, A, Grundhoff, A, Noyvert, B, Roberts, S & Parish, JL 2025, 'Repression of CADM1 transcription by HPV type 18 is mediated by three-dimensional rearrangement of promoter-enhancer interactions', PLoS Pathogens, vol. 21, no. 1, e1012506. https://doi.org/10.1371/journal.ppat.1012506
Dobrica, MO, Varghese, CS, Harris, JM, Ferguson, J, Magri, A, Arnold, R, Várnai, C, Parish, JL & McKeating, JA 2024, 'CTCF regulates hepatitis B virus cccDNA chromatin topology', Journal of General Virology, vol. 105, no. 1, 001939. https://doi.org/10.1099/jgv.0.001939
Kidd, SP, Burns, D, Armson, B, Beggs, AD, Howson, ELA, Williams, A, Snell, G, Wise, EL, Goring, A, Vincent-Mistiaen, Z, Grippon, S, Sawyer, J, Cassar, C, Cross, D, Lewis, T, Reid, SM, Rivers, S, James, J, Skinner, P, Banyard, A, Davies, K, Ptasinska, A, Whalley, C, Ferguson, J, Bryer, C, Poxon, C, Bosworth, A, Kidd, M, Richter, A, Burton, J, Love, H, Fouch, S, Tillyer, C, Sowood, A, Patrick, H, Moore, N, Andreou, M, Morant, N, Houghton, R, Parker, J, Slater-Jefferies, J, Brown, I, Gretton, C, Deans, Z, Porter, D, Cortes, NJ, Douglas, A, Hill, SL, Godfrey, KM & Fowler, VL 2022, 'Reverse-transcription loop-mediated isothermal amplification has high accuracy for detecting severe acute respiratory syndrome Coronavirus 2 in saliva and nasopharyngeal/oropharyngeal swabs from asymptomatic and symptomatic individuals', Journal of Molecular Diagnostics, vol. 24, no. 4, pp. 320-336. https://doi.org/10.1016/j.jmoldx.2021.12.007
COVID-19 Genomics UK (COG-UK) Consortium 2022, 'SARS-CoV-2 testing in the community: testing positive samples with the TaqMan SARS-CoV-2 mutation panel to find variants in real time', Journal of Clinical Microbiology, vol. 60, no. 4, e0240821. https://doi.org/10.1128/jcm.02408-21
Ferguson, J, Leon, KC, Pentland, I, Stockton, J, Günther, T, Grundhoff, A, Beggs, A, Roberts, S, Noyvert, B & Parish, JL 2021, 'The chromatin insulator CTCF regulates HPV18 transcript splicing and differentiation-dependent late gene expression', PLoS Pathogens, vol. 17, no. 11, e1010032. https://doi.org/10.1371/journal.ppat.1010032
Ferguson, J, Dunn, S, Best, A, Mirza, J, Percival, B, Mayhew, M, Megram, O, Ashford, F, White, T, Moles-Garcia, E, Crawford, L, Plant, T, Bosworth, A, Kidd, M, Richter, A, Deeks, J & McNally, A 2021, 'Validation testing to determine the sensitivity of lateral flow testing for asymptomatic SARS-CoV-2 detection in low prevalence settings: testing frequency and public health messaging is key', PLoS Biology, vol. 19, no. 4, e3001216. https://doi.org/10.1371/journal.pbio.3001216
D'Arienzo, V, Ferguson, J, Giraud, G, Chapus, F, Harris, J, Wing, P, Claydon, A, Begum, S, Zhuang, X, Balfe, P, Testoni, B, McKeating, JA & Parish, J 2020, 'The CCCTC-binding factor CTCF represses hepatitis B virus Enhancer I and regulates viral transcription', Cellular Microbiology, vol. 2020, e13274. https://doi.org/10.1111/cmi.13274
Preprint
Dobrica, MO, Varghese, CS, Harris, JM, Ferguson, J, Magri, A, Arnold, R, Várnai, C, Parish, JL & McKeating, JA 2023 'CTCF regulates hepatitis B virus cccDNA chromatin topology' bioRxiv. https://doi.org/10.1101/2023.09.06.556185
Ferguson, J, Leon, KC, Pentland, I, Stockton, J, Günther, T, Beggs, A, Roberts, S, Noyvert, B & Parish, JL 2021 'The chromatin insulator CTCF regulates HPV18 transcript splicing and differentiation-dependent late gene expression' bioRxiv. https://doi.org/10.1101/2021.04.30.442078
Review article
Varghese, CS, Parish, JL & Ferguson, J 2022, 'Lying low-chromatin insulation in persistent DNA virus infection', Current Opinion in Virology, vol. 55, 101257. https://doi.org/10.1016/j.coviro.2022.101257
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