Recent publications
Article
Metris, A, Walker, AW, Showering, A, Doolan, A, McBain, AJ, Ampatzoglou, A, Murphy, B, O'Neill, C, Shortt, C, Darby, EM, Aldis, G, Hillebrand, GG, Brown, HL, Browne, HP, Tiesman, JP, Leng, J, Lahti, L, Jakubovics, NS, Hasselwander, O, Finn, RD, Klamert, S, Korcsmaros, T & Hall, LJ 2025, 'Assessing the safety of microbiome perturbations', Microbial Genomics, vol. 11, no. 5, 001405. https://doi.org/10.1099/mgen.0.001405
Jain, V, Nulty, J, Alexander, EC, Burford, C, Davenport, M, Chokshi, S, Riva, A, Dalby, MJ, Verma, A, Hall, LJ, Yuksel, M & Dhawan, A 2025, 'Claudin-3, Lipopolysaccharide Binding Protein, and Jaundice Clearance in Infants with Biliary Atresia', Journal of Pediatrics, vol. 286, 114703. https://doi.org/10.1016/j.jpeds.2025.114703
Saeed, MH, Kujawska, M, Ellen, K, Acuna-Gonzalez, A, Bernabeu Lorenzo, M, Carmen Collado, M, Mommers, M, van Best, N, Hall, LJ & Neuhaus, K 2025, 'Comprehensive analysis of Enterococcus spp. from two European healthy infant cohorts shows stable genomic traits including antimicrobial resistance (AMR)', Gut Microbes, vol. 17, no. 1, 2516699. https://doi.org/10.1080/19490976.2025.2516699
Kaktcham, PM, Kujawska, M, Kouam, EMF, Piame, LT, Tientcheu, MLT, Felsl, A, Truppel, B-A, Ngoufack, FZ & Hall, LJ 2025, 'Genomic insights into the beneficial potential of Bifidobacterium and Enterococcus strains isolated from Cameroonian infants', Microbial Genomics, vol. 11, no. 2, 001354. https://doi.org/10.1099/mgen.0.001354
Kujawska, M, Seki, D, Chalklen, L, Malsom, J, Kiu, R, Goatcher, S, Christoforou, I, Mitra, S, Crouch, L & Hall, LJ 2025, 'Host-specific microbiome and genomic signatures in Bifidobacterium reveal co-evolutionary and functional adaptations across diverse animal hosts', Cell Host and Microbe, vol. 33, no. 9, pp. 1502-1517.e13. https://doi.org/10.1016/j.chom.2025.08.008
Samarra, A, Renwick, S, Arzamasov, AA, Rodionov, DA, Spann, K, Cabrera-Rubio, R, Acuna-Gonzalez, A, Martínez-Costa, C, Hall, L, Segata, N, Osterman, AL, Bode, L & Collado, MC 2025, 'Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome', Gut Microbes, vol. 17, no. 1, 2501192. https://doi.org/10.1080/19490976.2025.2501192
Kiu, R, Darby, EM, Alcon-Giner, C, Acuna-Gonzalez, A, Camargo, A, Lamberte, LE, Phillips, S, Sim, K, Shaw, AG, Clarke, P, van Schaik, W, Kroll, JS & Hall, LJ 2025, 'Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome of very-low-birth-weight preterm infants', Nature Communications, vol. 16, 7569. https://doi.org/10.1038/s41467-025-62584-2
Maiti, KS, Roy, S, Zenner, C, J Hall, L, Hauer, J & Sroka, R 2025, 'Infrared Spectroscopic Profiling of Volatile Metabolites from Uropathogenic Bacteria: Basic Investigations toward Rapid UTI Diagnostics', Analytical Chemistry, vol. 97, no. 39, pp. 21449-21458. https://doi.org/10.1021/acs.analchem.5c03269
Zenner, C, Hall, LJ, Roy, S, Hauer, J, Sroka, R & Maiti, KS 2025, 'Measurement of Bacterial Headspaces by FT-IR Spectroscopy Reveals Distinct Volatile Organic Compound Signatures', Analytical Chemistry, vol. 97, no. 1, pp. 106-113. https://doi.org/10.1021/acs.analchem.4c02899
Lopez-Tello, J, Kiu, R, Schofield, Z, Dalby, MJ, van Sinderen, D, Gall, GL, Hall, LJ & Sferruzzi-Perri, AN 2025, 'Placental endocrine function is controlled by maternal gut Bifidobacterium in germ-free mice', Journal of translational medicine, vol. 23, no. 1, 1031. https://doi.org/10.1186/s12967-025-07198-4
Bakshani, CR, Urbanowicz, PA, Tortosa, CB, Melo Diaz, JM, Kujawska, M, Ojuri, TO, Hall, LJ, Spencer, DIR, Bolam, DN & Crouch, LI 2025, 'PNGaseL from Flavobacterium akiainvivens targets a diverse range of N-glycan structures', Royal Society Open Science, vol. 12, no. 8, 251012. https://doi.org/10.1098/rsos.251012
Teng, NMY, Malfettone, A, Dalby, MJ, Kiu, R, Seki, D, Robinson, T, Gion, M, Bermejo, B, Pérez-García, JM, Prat, A, Vázquez, RM, Llombart-Cussac, A, Curigliano, G, Schmid, P, Barroso-Sousa, R, Mancino, M, Shimizu, E, Rodríguez-Morató, J, Mina, L, Hall, LJ, Robinson, SD & Cortés, J 2025, 'Profiling the gut and oral microbiota of hormone receptor-positive, HER2-negative metastatic breast cancer patients receiving pembrolizumab and eribulin', Microbiome Research Reports, vol. 4, no. 1, 4. https://doi.org/10.20517/mrr.2024.49
Letter
Jain, V, Alexander, EC, Burford, C, Davenport, M, Dalby, MJ, Hall, LJ & Dhawan, A 2025, 'Ethanol in biliary atresia', Archives of Disease in Childhood. https://doi.org/10.1136/archdischild-2024-328338
Review article
Mudhluli, TE, Mashingaidze-Mano, R, Chitsike, I, Manasa, J, Hall, LJ, Gomo, E & Zhou, DT 2025, 'Gut microbiota of sub-Saharan Africa infants exposed to antiretroviral therapy: Scoping review', African journal of primary health care & family medicine, vol. 17, no. 1, a4939. https://doi.org/10.4102/phcfm.v17i1.4939
Flores Ventura, E, Esteban-Torres, M, Gueimonde, M, van Sinderen, D, Koren, O, Hall, LJ, Segata, N, Valles-Colomer, M & Collado, MC 2025, 'Mother-to-infant vertical transmission in early life: a systematic review and proportional meta-analysis of Bifidobacterium strain transmissibility', npj Biofilms and Microbiomes, vol. 11, no. 1, 121. https://doi.org/10.1038/s41522-025-00720-y
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