Resources from the Cooper Mass Spectrometry Group
Software
FAIMS transmission maps
- Instructions for generating FAIMS total and single ion transmission maps.
- Zipped folder containing Matlab code for FAIMS transmission map generation.
Native protein mass spectrometry
- Zipped folder containing instructions and Matlab code for native MS imaging.
- Zipped folder containing Matlab software for native LESA TWIMS MS imaging.
- Zipped folder containing a Python script for comparing ion and mass images by cosine similarity.
Datasets
- Proteome Exchange dataset from the paper: Probing the Complementarity of FAIMS and Strong Cation Exchange Chromatography in Shotgun Proteomics, JASMS, 2013, page 431-443.
- Zipped mgf file from SCX-ETD analysis of synthetic phosphopeptides, Analytical Chemistry, 2013, page 4836-4843.
- Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical Chemistry, 2013, page 4836-4843.
Databases
- Synthetic Phospho-peptide database, GPSGXVpSXAQLX(K/R) and SXPFKXpSPLXFG(K/R)
- Database containing the proteins from the six protein mix and trypsin