Recent publications
Article
BigData@Heart Consortium and the cardAIc group 2023, 'Artificial intelligence to enhance clinical value across the spectrum of cardiovascular healthcare: artificial intelligence framework', European Heart Journal, vol. 44, no. 9, pp. 713–725. https://doi.org/10.1093/eurheartj/ehac758
Maier, D, Exner, TE, Papadiamantis, AG, Ammar, A, Tsoumanis, A, Doganis, P, Rouse, I, Slater, LT, Gkoutos, GV, Jeliazkova, N, Ilgenfritz, H, Ziegler, M, Gerhard, B, Kopetsky, S, Joshi, D, Walker, L, Svendsen, C, Sarimveis, H, Lobaskin, V, Himly, M, Van rijn, J, Winckers, L, Millán acosta, J, Willighagen, E, Melagraki, G, Afantitis, A & Lynch, I 2023, 'Harmonising knowledge for safer materials via the “NanoCommons” Knowledge Base', Frontiers in Physics, vol. 11, 1271842. https://doi.org/10.3389/fphy.2023.1271842
Slater, LT, Williams, JA, Schofield, PN, Russell, S, Pendleton, SC, Karwath, A, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, GV 2023, 'Klarigi: characteristic explanations for semantic biomedical data', Computers in Biology and Medicine, vol. 153, 106425. https://doi.org/10.1016/j.compbiomed.2022.106425
Aziz, F, Slater, LT, Bravo-Merodio, L, Acharjee, A & Gkoutos, GV 2023, 'Link prediction in complex network using information flow', Scientific Reports, vol. 13, no. 1, 14660. https://doi.org/10.1038/s41598-023-41476-9
Slater, LT, Russell, S, Makepeace, S, Carberry, A, Karwath, A, Williams, JA, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, GV 2022, 'Evaluating semantic similarity methods for comparison of text-derived phenotype profiles', BMC Medical Informatics and Decision Making, vol. 22, no. 1, 33. https://doi.org/10.1186/s12911-022-01770-4
Maruszczyk, K, Aiyegbusi, OL, Roth Cardoso, V, Gkoutos, G, Slater, L, Collis, P, Keeley, T & Calvert, M 2022, 'Implementation of patient-reported outcome measures in real-world evidence studies: analysis of ClinicalTrials.gov records (1999-2021)', Contemporary Clinical Trials, vol. 120, 106882. https://doi.org/10.1016/j.cct.2022.106882
Slater, LT, Bradlow, W, Motti, DF, Hoehndorf, R, Ball, S & Gkoutos, GV 2021, 'A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text', Computers in Biology and Medicine, vol. 130, 104216. https://doi.org/10.1016/j.compbiomed.2021.104216
Pendleton, SC, Slater, LT, Karwath, A, Gilbert, RM, Davis, N, Pesudovs, K, Liu, X, Denniston, AK, Gkoutos, GV & Braithwaite, T 2021, 'Development and application of the ocular immune-mediated inflammatory diseases ontology enhanced with synonyms from online patient support forum conversation', Computers in Biology and Medicine, vol. 135, 104542. https://doi.org/10.1016/j.compbiomed.2021.104542
Slater, LT, Karwath, A, Hoehndorf, R & Gkoutos, GV 2021, 'Effects of negation and uncertainty stratification on text-derived patient profile similarity', Frontiers in digital health, vol. 3, 781227. https://doi.org/10.3389/fdgth.2021.781227
Carr, E, Bendayan, R, Bean, D, Stammers, M, Wang, W, Zhang, H, Searle, T, Kraljevic, Z, Shek, A, Phan, HTT, Muruet, W, Gupta, RK, Shinton, AJ, Wyatt, M, Shi, T, Zhang, X, Pickles, A, Stahl, D, Zakeri, R, Noursadeghi, M, O'Gallagher, K, Rogers, M, Folarin, A, Karwath, A, Wickstrøm, KE, Köhn-Luque, A, Slater, L, Cardoso, VR, Bourdeaux, C, Holten, AR, Ball, S, McWilliams, C, Roguski, L, Borca, F, Batchelor, J, Amundsen, EK, Wu, X, Gkoutos, GV, Sun, J, Pinto, A, Guthrie, B, Breen, C, Douiri, A, Wu, H, Curcin, V, Teo, JT, Shah, AM & Dobson, RJB 2021, 'Evaluation and improvement of the National Early Warning Score (NEWS2) for COVID-19: a multi-hospital study', BMC medicine, vol. 19, no. 1, 23. https://doi.org/10.1186/s12916-020-01893-3
Slater, LT, Bradlow, W, Ball, S, Hoehndorf, R & Gkoutos, GV 2021, 'Improved characterisation of clinical text through ontology-based vocabulary expansion', Journal of Biomedical Semantics, vol. 12, no. 1, 7. https://doi.org/10.1186/s13326-021-00241-5
Slater, LT, Williams, JA, Karwath, A, Fanning, H, Ball, S, Schofield, PN, Hoehndorf, R & Gkoutos, GV 2021, 'Multi-faceted semantic clustering with text-derived phenotypes', Computers in Biology and Medicine, vol. 138, 104904. https://doi.org/10.1016/j.compbiomed.2021.104904
Karwath, A, Bunting, KV, Gill, SK, Tica, O, Pendleton, S, Aziz, F, Barsky, AD, Chernbumroong, S, Duan, J, Mobley, AR, Cardoso, VR, Slater, L, Williams, JA, Bruce, E, Wang, X, Flather, MD, Coats, AJS, Gkoutos, GV & Kotecha, D 2021, 'Redefining β-blocker response in heart failure patients with sinus rhythm and atrial fibrillation: a machine learning cluster analysis', The Lancet, vol. 2021, no. 10309, pp. 1-9. https://doi.org/10.1016/s0140-6736(21)01638-x
Preprint
Slater, LT, Russell, S, Makepeace, S, Carberry, A, Karwath, A, Williams, JA, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, GV 2021 'Evaluating semantic similarity methods for comparison of text-derived phenotype profiles' medRxiv. https://doi.org/10.1101/2021.08.08.21261762
Review article
Wu, H, Wang, M, Wu, J, Francis, F, Chang, Y-H, Shavick, A, Dong, H, Poon, MTC, Fitzpatrick, N, Levine, AP, Slater, LT, Handy, A, Karwath, A, Gkoutos, GV, Chelala, C, Shah, AD, Stewart, R, Collier, N, Alex, B, Whiteley, W, Sudlow, C, Roberts, A & Dobson, RJB 2022, 'A survey on clinical natural language processing in the United Kingdom from 2007 to 2022', NPJ digital medicine, vol. 5, no. 1, 186. https://doi.org/10.1038/s41746-022-00730-6
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